The recent attacks on the Avengers Alliance by Ra's Al Ghul and Vandal Savage is over but the fallout from that event had spread as everyone close to Shinji Ikari had turned against him.
Within his own family, the unity of the Ikari-Phenex Clan was falling apart as his numerous siblings have already turned against him as well. Even Hayate and Ayane's actions in the end of the 4th DOA tournament have begun to tear the family apart.
But the worst moment comes when Shinji returns to Konoha.
As the evil Danzo Shimura and rogue elements within the Ikari-Phenex Clan's numerous vassals makes their move, a similar conspiracy is hatched by members of the Konoha Rookiees as well as their families and senseis.
Their goal: To prevent Konoha from being dragged into a war with Nobunaga, Shinji Ikari - together with his siblings Kasumi, Rin Okumura, Kunihiro Phenex and twin brothers Sasuke and Nagamasa Uchiha - must be assassinated.
At the sametime, an emotionally distraught Korra and Yuka Takeuchi Uzumaki begins to question their obligations to their loved ones when their actions against Shinji has begun to poison their own bonds with them.
Meanwhile, Jubei Yagyu Mitsuyoshi races to prevent a tragedy from taking palce while Rei Ayanami and Deedlit leads the feared Wolf Troopers to Konoha for an eventuall showdown. And Nobunaga li Britannia also heads to Konoha for a more specific purpose in mind.
At the sametime, Tsunade Ikari is facing increased opposition from a hostile civilian council and worse, she no longer has faith in trusting Minato or Kushina, leading to a moment in Konoha's history that is about to unleash the Fires of Hell.
Conflict soon breaks out when a tragic moment occurs and as heavy rains are coated in blood, what will transpire at Konoha will have a lasting shadow in the coming years.